I Introduction

1 Workshop Info

Coming soon!

1.1 Schedule

Time (Mountain) Time (Eastern) July 7 Time (Mountain) Time (Eastern) July 8 Time (Mountain) Time (Eastern) July 9
7:30 9:30 Arrivals & Check-in 7:30 9:30 Arrivals 7:30 9:30 Arrivals
8:00 10:00 Welcome (Nia Hughes) 8:00 10:00 Module 2 - RNA alignment (practical) 8:00 10:00 Module 3 - RNA Expression and Differential Expression (Practical cont’d)
8:30 10:30 Module 1 - Intro to RNAseq course/concepts (lecture) (Malachi Griffith)
9:30 11:30 Break (30min) 10:00 12:00 Break (30min) 10:00 12:00 Break (30min)
10:00 12:00 AWS Login and Setup 10:30 12:30 Module 2 - RNA alignment (practical cont’d) 10:30 12:30 Module 4 - Advanced Topics (Lecture) (Malachi Griffith)
10:30 12:30 Module 1 - RNAseq inputs and QC (practical)
11:30 13:30 Lunch (1h) 11:30 13:30 Lunch (1h) 11:30 13:30 Lunch + Class Photo (1h)
12:30 14:30 Module 1 - RNAseq inputs and QC (practical cont’d) 12:30 14:30 Module 3 - RNA Expression and Differential Expression (Lecture) (Obi Griffith) 12:30 14:30 Module 4 - Pathway Analysis (Practical)
14:30 16:30 Break (30min) 13:30 15:30 Break (30min) 14:30 16:30 Break (30min)
15:00 17:00 Module 2 - RNA alignment concepts and file formats (lecture) (Obi Griffith) 14:00 16:00 Module 3 - RNA Expression and Differential Expression (Practical) 15:00 17:00 Module 4 - Batch Correction (Practical)
16:00 18:00 Survey & Closing Remarks
16:30 18:30 (Optional) Team Assignment 16:30 18:30 (Optional) Team Assignment 16:30 18:30 End of Day 3
17:00 19:00 End of Day 1 17:30 19:30 End of Day 2

2 Meet Your Faculty

3 Data and Compute Setup

3.0.0.1 Course data downloads

Coming soon!

3.0.0.2 Compute setup

Coming soon!

II Modules

4 Module 1

4.1 Lecture

4.2 Lab

5 Module 2

5.1 Lecture

5.2 Lab

6 Module 3

6.1 Lecture

6.2 Lab

7 Module 4

7.1 Lecture

7.2 Lab